Detailed Information of Rice RNA-seq data Sample Study Title DRX000459 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate starvation_1day_Root DRX000460 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate starvation_5days_Root DRX000461 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_0day_Shoot DRX000462 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate starvation_1day_Shoot DRX000463 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate starvation_5days_Shoot DRX000464 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_0day_Root DRX000465 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate sufficient_1day_Root DRX000466 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate sufficient_5days_Root DRX000467 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate sufficient_1day_Shoot DRX000468 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate sufficient_5days_Shoot DRX000469 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate starvation_10days_Root DRX000470 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate sufficient_10days_Root DRX000471 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate starvation_10days_Shoot DRX000472 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate sufficient_10days_Shoot DRX000473 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate starvation_10days_Recover_1day_Root DRX000474 DRP000315 Illumina sequencing of cDNAs derived from rice mRNA_Phosphate sufficient_10days_Recover_1day_Root DRX002019 DRP000716 No.7 110405_1- AR00 Nipponbar 0da roo _1 DRX002020 DRP000716 No.7 110405_1- AR00 Nipponbar 0da roo 2 DRX002021 DRP000716 No.7 110405_1- AR00 Nipponbar 0da roo 3 DRX002022 DRP000716 No.7 110405_1- AR00 Nipponbar 0da roo 4 DRX002023 DRP000716 No.7 110405_7- AR00 Nipponbar 22da roo 5 DRX002024 DRP000716 No.7 110405_7- AR00 Nipponbar 22da roo 6 DRX002025 DRP000716 No.7 110405_7- AR00 Nipponbar 22da roo 7 DRX002026 DRP000716 No.7 110405_7- AR00 Nipponbar 22da roo 8 DRX002027 DRP000716 No.7 110405_10- AR00 Nipponbar 0da shoo 9 DRX002028 DRP000716 No.7 110405_10- AR00 Nipponbar 0da shoo 10 DRX002029 DRP000716 No.7 110405_10- AR00 Nipponbar 0da shoo 11 DRX002030 DRP000716 No.7 110405_16- AR00 Nipponbar 22da shoo 12 DRX002031 DRP000716 No.7 110405_16- AR00 Nipponbar 22da shoo 13 DRX002032 DRP000716 No.7 110405_16- AR00 Nipponbar 22da shoo 14 SRX081716 SRP007395 GSM753519: Rice_root_tip-time_point_1-replicate_1 SRX081717 SRP007395 GSM753520: Rice_root_tip-time_point_1-replicate_2 SRX081718 SRP007395 GSM753521: Rice_root_tip-time_point_1-replicate_3 SRX081719 SRP007395 GSM753522: Rice_root_tip-time_point_2-replicate_1 SRX081720 SRP007395 GSM753523: Rice_root_tip-time_point_2-replicate_2 SRX081721 SRP007395 GSM753524: Rice_root_tip-time_point_2-replicate_3 SRX081722 SRP007395 GSM753525: Rice_root-time_point_1-replicate_1 SRX081723 SRP007395 GSM753526: Rice_root-time_point_1-replicate_2 SRX081724 SRP007395 GSM753527: Rice_root-time_point_2-replicate_1 SRX081725 SRP007395 GSM753528: Rice_root-time_point_2-replicate_2 SRX100741 SRP008821 "Oryza sativa, Nipponbare 20 Day Leaves RNA-Seq (OSN_AA)" SRX100743 SRP008821 "Oryza sativa, Nipponbare Emerging Inflorescence RNA-Seq (OSN_AB)" SRX100745 SRP008821 "Oryza sativa, Nipponbare Early Inflorescence RNA-Seq (OSN_AC)" SRX100746 SRP008821 "Oryza sativa, Nipponbare Anther RNA-Seq (OSN_AD)" SRX100747 SRP008821 "Oryza sativa, Nipponbare Pistil RNA-Seq (OSN_AE)" SRX100749 SRP008821 "Oryza sativa, Nipponbare Seed 5 Days After Pollination RNA-Seq (OSN_AF)" SRX100753 SRP008821 "Oryza sativa, Nipponbare Embryo 25 Days After Pollination RNA-Seq (OSN_AG)" SRX100754 SRP008821 "Oryza sativa, Nipponbare Endosperm 25 Days After Pollination RNA-Seq (OSN_AH)" SRX100755 SRP008821 "Oryza sativa, Nipponbare Seed 10 Days After Pollination RNA-Seq (OSN_AK)" SRX100756 SRP008821 "Oryza sativa, Nipponbare Endosperm 25 Days After Pollination RNA-Seq (OSN_BH)" SRX100757 SRP008821 "Oryza sativa, Nipponbare 20 Day Leaves RNA-Seq (OSN_CA)" SRX120234 SRP010960 GSM876135: Mock_infected_rice_root_tip-time_point_1-replicate_1 SRX120235 SRP010960 GSM876136: Mock_infected_rice_root_tip-time_point_1-replicate_2 SRX120236 SRP010960 GSM876137: Mock_infected_rice_root_tip-time_point_1-replicate_3 SRX120237 SRP010960 GSM876138: Mock_infected_rice_root_tip-time_point_2-replicate_1 SRX120238 SRP010960 GSM876139: Mock_infected_rice_root_tip-time_point_2-replicate_2 SRX120239 SRP010960 GSM876140: Mock_infected_rice_root_tip-time_point_2-replicate_3 SRX120240 SRP010960 GSM876141: Mock_infected_rice_root-time_point_1-replicate_1 SRX120241 SRP010960 GSM876142: Mock_infected_rice_root-time_point_1-replicate_2 SRX120242 SRP010960 GSM876143: Mock_infected_rice_root-time_point_2-replicate_1 SRX120243 SRP010960 GSM876144: Mock_infected_rice_root-time_point_2-replicate_2 SRX120244 SRP010960 GSM876145: Meloidogyne_infected_rice_root_tip-time_point_1-replicate_1 SRX120245 SRP010960 GSM876146: Meloidogyne_infected_rice_root_tip-time_point_1-replicate_2 SRX120246 SRP010960 GSM876147: Meloidogyne_infected_rice_root_tip-time_point_1-replicate_3 SRX120247 SRP010960 GSM876148: Meloidogyne_infected_rice_root_tip-time_point_2-replicate_1 SRX120248 SRP010960 GSM876149: Meloidogyne_infected_rice_root_tip-time_point_2-replicate_2 SRX120249 SRP010960 GSM876150: Meloidogyne_infected_rice_root_tip-time_point_2-replicate_3 SRX120250 SRP010960 GSM876151: Hirschmanniella_infected_rice_root-time_point_1-replicate_1 SRX120251 SRP010960 GSM876152: Hirschmanniella_infected_rice_root-time_point_1-replicate_2 SRX120252 SRP010960 GSM876153: Hirschmanniella_infected_rice_root-time_point_1-replicate_3 SRX120253 SRP010960 GSM876154: Hirschmanniella_infected_rice_root-time_point_2-replicate_1 SRX120254 SRP010960 GSM876155: Hirschmanniella_infected_rice_root-time_point_2-replicate_2 SRX130825 SRP011893 GSM898974: Sample 1 root mRNA CKR_1 As(III) 20/80 uM 0 h; Oryza sativa Japonica Group; RNA-Seq SRX130826 SRP011893 GSM898975: Sample 2 root mRNA LSR_1 As(III) 20 uM 6 h; Oryza sativa Japonica Group; RNA-Seq SRX130827 SRP011893 GSM898976: Sample 3 root mRNA HSR_1 As(III) 80 uM 6 h; Oryza sativa Japonica Group; RNA-Seq SRX130828 SRP011893 GSM898977: Sample 4 root mRNA LLR_1 As(III) 20 uM 24 h; Oryza sativa Japonica Group; RNA-Seq SRX130829 SRP011893 GSM898978: Sample 5 root mRNA HLR_1 As(III) 80 uM 24 h; Oryza sativa Japonica Group; RNA-Seq SRX130830 SRP011893 GSM898979: Sample 6 shoot mRNA CKS_1 As(III) 20/80 uM 0 h; Oryza sativa Japonica Group; RNA-Seq SRX130831 SRP011893 GSM898980: Sample 7 shoot mRNA LSS_1 As(III) 20 uM 6 h; Oryza sativa Japonica Group; RNA-Seq SRX130832 SRP011893 GSM898981: Sample 8 shoot mRNA HSS_1 As(III) 80 uM 6 h; Oryza sativa Japonica Group; RNA-Seq SRX130833 SRP011893 GSM898982: Sample 9 shoot mRNA LLS_1 As(III) 20 uM 24 h; Oryza sativa Japonica Group; RNA-Seq SRX130834 SRP011893 GSM898983: Sample 10 shoot mRNA HLS_1 As(III) 80 uM 24 h; Oryza sativa Japonica Group; RNA-Seq SRX151640 SRP013556 GSM943193: Nipponbare [sRNA-Seq]; Oryza sativa Japonica Group; RNA-Seq SRX151644 SRP013556 GSM943197: Nipponbare [RNA-Seq]; Oryza sativa Japonica Group; RNA-Seq SRX218209 SRP018016 GSM1065685: Vascular_Cells_uninfected_rice_root_time_point_1-replicate_1; Oryza sativa Japonica Group; RNA-Seq SRX218210 SRP018016 GSM1065686: Vascular_Cells_uninfected_rice_root_time_point_1-replicate_2; Oryza sativa Japonica Group; RNA-Seq SRX218211 SRP018016 GSM1065687: Vascular_Cells_uninfected_rice_root_time_point_2-replicate_1; Oryza sativa Japonica Group; RNA-Seq SRX218212 SRP018016 GSM1065688: Vascular_Cells_uninfected_rice_root_time_point_2-replicate_2; Oryza sativa Japonica Group; RNA-Seq SRX218213 SRP018016 GSM1065689: Giant_Cells_rice_root_time_point_1-replicate_1; Oryza sativa Japonica Group; RNA-Seq SRX218214 SRP018016 GSM1065690: Giant_Cells_rice_root_time_point_1-replicate_2; Oryza sativa Japonica Group; RNA-Seq SRX218215 SRP018016 GSM1065691: Giant_Cells_rice_root_time_point_2-replicate_1; Oryza sativa Japonica Group; RNA-Seq SRX218216 SRP018016 GSM1065692: Giant_Cells_rice_root_time_point_2-replicate_2; Oryza sativa Japonica Group; RNA-Seq